Bda

Center for Biosignatures Discovery Automation: Publications

2010

  • Dually Fluorescent Sensing of pH and Dissolved Oxygen Using a Membrane Made from Polymerizable Sensing Monomers”, Sensors and Actuators, B. Chemical, Accepted, 2010.
  • Y. Q. Tian, B. R. Shumway, D. R. Meldrum, “A New Crosslinkable Oxygen Sensor Covalently Bonded into Poly(2-hydroxyethyl methacrylate)-co-Polyacrylamide Thin Film for Dissolved Oxygen Sensing”, Chemistry of Materials 2010, in press.
  • Y. Q. Tian, W.-C. Wu, C.-Y. Chen, T. Strovas, Y. Li, Y. Jin, F. Su, D. R. Meldrum, A. K.-Y. Jen, “2,1,3-Benzothiadiazole (BTD)-moiety-containing red emitter conjugated amphiphilic poly(ethylene glycol)-block-poly(-caprolactone) copolymers for bioimaging”, Journal of Materials Chemistry 20(9), 1728-1736, 2010.
  • Y. Q. Tian, W.-C. Wu, C.-Y. Chen, S.-H. Jang, M. Zhang, T. Strovas, J. Anderson, B. Cookson, Y. Li, D. Meldrum, W. C. Chen, A. K.-Y. Jen, “Utilization of micelles formed from poly(ethylene glycol)-block-poly(-caprolactone) copolymers as nanocarriers to enable hydrophobic red two-photon absorbing (2PA) emitters for cells imaging”, Journal of Biomedical Materials Research Part A, 2010, In presss DOI: 10.1002/jbm.a.32607.
  • Y. Q. Tian, C. Y. Chen, H.-L. Yip, W.-C. Wu, W.-C. Chen, A. K.-Y. Jen, “Synthesis, nanostructure, functionality, and application of polyfluorene-block-poly(N-isopropylacrylamide)s”, Macromolecules 43(1):282-291, 2010.
  • Weimin Gao, Terry J. Gentry, Tonia L. Mehlhorn, Susan L. Carroll, Philip M. Jardine and Jizhong Zhou, “Characterization of Co(III) EDTA reducing bacteria in metal- and radionuclide-contaminated groundwater”, Geomicrobiology Journal 27: 93-100, 2010.
  • Yasser H. Anis, Mark R. Holl, and Deirdre R. Meldrum, Automated Selection and Placement of Single Cells Using Vision-Based Feedback Control IEEE Transactions on Automation Science and Engineering, online prepub, January 2010. doi: 10.1109/TASE.2009.2035709
    URL: http://ieeexplore.ieee.org/stamp/stamp.jsp?tp=&arnumber=5373841&isnumber=4358066
  • J. Henry, J. Lin, S. Singh, “Opportunities created by comparative effectiveness research in the US healthcare industry and academia”, Practice Document published in McKinsey's Knowledge portal, January 2010.


2009

  • Molter, Timothy W.; McQuaide, Sarah C.; Suchorolski, Martin T.; Strovas, Tim J.; Burgess, Lloyd W.; Meldrum, Deirdre R.; Lidstrom, Mary E, “A microwell array device capable of measuring single-cell oxygen consumption rates”, Sensors and Actuators, B 135(2):678-686, 2009.
  • Z. W. Shi, J. D. Luo, S. Huang, Y. J. Cheng, T. D. Kim, B. M. Polishak, X. H. Zhou, Y. Q. Tian, S. H. Jang, D. B. Knorr, R. M. Overney, T. R. Younkin, A. K. Y. Jen, “Controlled Diels-Alder reactions used to incorporate highly efficient polyenic chromophores into maleimide-containing side-chain polymers for electro-optics”, Macromolecules 42(7):2438-2445, 2009
  • Shih-hui Chao and Deirdre R. Meldrum, "Liquid pumping with surface tension-confined microfluidics," Proceedings of the 13th international conference on Miniaturized Systems for Chemistry and Life Sciences (MicroTAS 2009), Jeju, Korea, pp. 61-63.
  • Shih-hui Chao and Deirdre R. Meldrum, “Spontaneous, oscillatory liquid transport in surface tension-confined microfluidics”, Lab on a Chip 9(7):867-869, 2009.
  • Liang-I Lin, Shih-hui Chao, and Deirdre R. Meldrum, “Practical, microfabrication-free device for single-cell isolation”, PLoS ONE 4(8): e6710, 2009.
  • Saeed A. Merza, Jonathan D. Posner, Yasser H. Anis, A. Cody Young, Roger H. Johnson, Deirdre R. Meldrum, “Microfluidic Device For Transport And Observation of Single Cells” Proc. ASME IMECE, Lake Buena Vista, FL, Nov. 13-19, 2009.
  • Haixin Zhu, Mark Holl, Tathagata Ray, Shivani Bhushan and Deirdre R Meldrum, “Characterization of deep wet etching of fused silica glass for single cell and optical sensor deposition”, J. Micromech. Microeng. 19:065013 (8pp), 2009.
  • Wandaliz Torres-Garcia, Weiwen Zhang, George C. Runger, Roger H. Johnson and Deirdre R. Meldrum, “Integrative analysis of transcriptomic and proteomic data of Desulfovibrio vulgaris: a non-linear model to predict abundance of undetected proteins”, Bioinformatics 25(15):1905-1914, 2009.
  • John H. Koschwanez, Robert H. Carlson, Deirdre R. Meldrum, “Thin PDMS films using long spin times or tert-butyl alcohol as a solvent”, PLoS ONE 4(2):e4572, 2009.
  • A. S. Chawla, R. S. Saunders, S. Singh, J. Y. Lo, E. Samei, “Towards optimized acquisition scheme for multiprojection correlation imaging of breast cancer”, Academic Radiology 16(4):456-463, 2009.


2008

  • McGuire, Shawn; Fisher, Charles; Holl, Mark; Meldrum, Deirdre, “A novel pressure-driven piezodispenser for nanoliter volumes”, Review of Scientific Instruments 79(8), 086111/1-086111/3, 2008.
  • Lee, Szu-Yuan; Huang, Jhen-Gang; Chuang, Tsung-Liang; Sheu, Jin-Chuan; Chuang, Yi-Kuang; Holl, Mark; Meldrum, Deirdre R.; Lee, Chun-Nan; Lin, Chii-Wann, “Compact optical diagnostic device for isothermal nucleic acids amplification”, Sensors and Actuators B 133(2):493-501, 2008.
  • Kim, Samuel; Amirparviz, Babak; Meldrum, Deirdre; Saeedi, Ehsan, “Self-assembled heterogeneous integrated optical analysis system”, PCT Int. Appl., 42pp. WO 2008086090 A1 20080717, 2008.
  • Seriburi, Pahnit; McGuire, Shawn; Shastry, Ashutosh; Bohringer, Karl F.; Meldrum, Deirdre R, “Measurement of the cell-substrate separation and the projected area of an individual adherent cell using electric cell-substrate impedance sensing”, Analytical Chemistry 80(10):3677-3683, 2008.
  • Fan, Erkang; Baker, David; Fields, Stanley; Gelb, Michael H.; Buckner, Frederick S.; van Voorhis, Wesley C.; Phizicky, Eric; Dumont, Mark; Mehlin, Christopher; Grayhack, Elizabeth; Sullivan, Mark; Verlinde, Christophe; DeTitta, George; Meldrum, Deirdre R.; Merritt, Ethan A.; Earnest, Thomas; Soltis, Michael; Zucker, Frank; Myler, Peter J.; Schoenfeld, Lori; Kim, David; Worthey, Liz; LaCount, Doug; Vignali, Marissa; Li, Jizhen; Mondal, Somnath; Massey, Archna; Carroll, Brian; Gulde, Stacey; Luft, Joseph; DeSoto, Larry; Holl, Mark; Caruthers, Jonathan; Bosch, Jurgen; Robien, Mark; Arakaki, Tracy; Holmes, Margaret; Le Trong, Isolde; Hol, Wim G. J., “Structural genomics of pathogenic protozoa: an overview”, Methods in Molecular Biology (Totowa, NJ) 426(Structural Proteomics):497-513, 2008.
  • F.Y. Su, C.Y. Xu, M. Taya, K. Murayama, Y. Shinohara, S. Nishimura, “Detection of carcinoembryonic antigens using surface plasmon resonance biosensor”, Sensors, 8:4282-4295, 2008.
  • X.F. Zhou, W. Kong, and J.C. Shen, “The effect of conjugation to gold nanoparticles on the ability of low molecular weight chitosan to transfer DNA vaccine”, Biomaterials. 29(1): 111-117, 2008.
  • X.F. Zhou, W. Kong, and J.C. Shen, “Controlled release of DNA/ PEI complexes from PLGA microcapsules as a potent delivery system to enhance immune response to HIV vaccine DNA prime/MVA boost regime”, Eur J Pharm Biopharm. 68(3): 589-595, 2008.
  • T. D. Kim, J. Luo, Y. Cheng, Z. Shi, Z, S. Hau, S. Jang, X. Zhou, Y. Q. Tian, B. Polishak, S. Huang, H. Ma, L. R. Dalton, A. K.-Y. Jen, “Binary chromophore systems in nonlinear optical dendrimers and polymers for large electrooptic activities”, J. Phys. Chem. C. 112 (21), 8091-8098, 2008.
  • Y.-J. Cheng, M. S. Liu, Y. Niu, F. Huang, H.-L. Yip, Y. Q. Tian, A. K-Y. Jen, “Synthesis and characterization of hole-transporting materials using styrene as a efficient thermally crosslinkable group for light-emitting devices”, Chemistry of Materials 20(2):413-422, 2008.
  • S. Singh, G. D. Tourassi, J. A. Baker, E. Samei, J. Y. Lo, “Automated breast mass detection in 3D reconstructed tomosynthesis volumes: A featureless approach”, Medical Physics 35:3626-3636, 2008.
  • G. D. Tourassi, R. Ike, S. Singh, B. Harrawood, “Evaluating the effect of image preprocessing on an information-theoretic CAD system in mammography”, Academic Radiology 15(5):626-634, 2008.
  • Yanqing Tian, Ching-Yi Chen, Chang-Chung Yang, A. Cody Young, Sei-Hum Jang, Wen-Chang Chen, and Alex K.-Y. Jen "2-(2'-hydroxyphenyl)benzoxazole-containing two-photon-absorbing chromophores as sensors for zinc and hydroxide ions." Chem. Mater. 20:1977-1987, 2008.
  • Timothy W. Molter, Mark R. Holl, Joseph M. Dragavon, Sarah C. McQuaide, Judith B. Anderson, Lloyd W. Burgess, Mary E. Lidstrom, and Deirdre R. Meldrum, "A novel approach for measuring single cell oxygen consumption rates," IEEE Transactions on Automation Science and Engineering, 5(1): 32-42, 2008.
  • Pahnit Seriburi, Shawn McGuire, Ashutosh Shastry, Karl Bohringer, and Deirdre Meldrum, "Measurement of the cell-substrate separation and the projected area of an individual adherent cell using electricl cell-substrate impedance sensing," Analytical Chemistry, 80(10):3677-3683, 2008.
  • Joe Dragavon, Tim Molter, Cody Young, Tim Strovas, Sarah McQuaide, Mark Holl, Meng Zhang, Brad Cookson, Alex Jen, Mary Lidstrom, Deirdre Meldrum, and Lloyd Burgess, "A cellular isolation system for real-time single-cell oxygen consumption monitoring," J. R. Soc. Interface 5:S151-S159, June 2008.
  • Szu-Yuan Lee, Jhen-Gang Huang, Tsung-Liang Chuang, Jin-Chuan Sheu, Yi-Kuang Chuang, Mark Holl, Deirdre R. Meldrum, Chun-Nan Lee, and Chii-Wann Lin, "Compact optical diagnostic device for isothermal nucleic acids amplification," Sensors and Actuators B: Chemical 133(2):493-501, August 2008.
  • Shawn McGuire, Charles Fisher, Mark Holl, and Deirdre Meldrum, "A novel pressure-driven piezodispenser for nanoliter volumes," Review of Scientific Instruments, 79(8):086111-086111-3, August 2008.


2007

  • X.F. Zhou, B. Liu, X.H. Yu, X. Zha, W. Kong, and J.C. Shen, “Enhanced immune response to DNA vaccine based on a novel multicomponent supramolecular assembly”, Biomaterials 28:4684-4692, 2007.
  • X.F. Zhou, B. Liu, X.H. Yu, X. Zha, W. Kong, and J.C. Shen, “Mannose-bearing chitosan derivatives as a potent delivery system to enhance immune response to HBV DNA vaccine”, Journal of Controlled Release 121:200-207, 2007.
  • X.F. Zhou, W. Kong, and J.C. Shen, “Using magnetic force to enhance immune response to DNA vaccine”, Small 3:1707-1713, 2007.
  • Y. Q. Tian, C.-Y. Chen, M. A. Haller, N. M. Tucker, J.-W. Ka, J. D. Luo, S. Huang, A. K.-Y. Jen, “Nanostructured functional block copolymers for electro-optic devices”, Macromolecules 40(1):97-104, 2007.
  • C.-C. Yang, Y. Q. Tian, C.-Y. Chen, A. K.-Y. Jen, W.-C. Chen, “New 2-(2-hydroxyphenyl)benzoxazole-containing poly(N-isopropylacrylamide) copolymer as pH, zinc ion and temperature sensor”, Macromol. Rapid. Commun. 28:894-899, 2007.
  • W.-C. Wu, Y. Q. Tian, C.-Y. Chen, C.-S. Lee, Y.-J. Sheng, W.-C. Chen, A. K.-Y. Jen, “Theoretical and experimental studies on the surface structures of conjugated rod-coil block copolymer brushes”, Langmuir 23(5):2805-2814, 2007.
  • Y. Niu, A. M. Munro, Y.-J. Cheng, Y. Q. Tian, M. S. Liu, J. Zhao, J. A. Bardecker, I.J-L. Plante, D. S. Ginger, A. K-Y. Jen, “Improved performance from multilayer quantum-dot light-emitting diodes via thermal annealing of the quantum dot layer”, Adv. Mater. 19(20):3371-3376, 2007.
  • Y. Enami, C. T. Derose, D. Mathine, C. Loychiki, C. Greenlee, R. A. Norwood, T. D. Kim, J. Luo, Y. Q. Tian, A. K.-Y. Jen, N. Peyghambarian, “Hybrid polymer/sol-gel waveguide modulators with exceptionally large electro-optic coefficients”, Nature Photonics 1(3):180-185, 2007.
  • Y.-J. Cheng, J. D. Luo, S. Hau, D. H. Bale, T. D. Kim, Z. Shi, D. B. Lao, N. M. Tucker, Y. Q. Tian, L. R. Dalton, P. J. Reid, A. K.-Y. Jen, “Large electro-optic activity and enhanced thermal stability from diarylaminophenyl-containing high-nonlinear optical chromophores”, Chemistry of Materials 19(5):1154-1163, 2007.
  • G. D. Tourassi, B. Harrawood, S. Singh, J. Y. Lo, Floyd CE, “Evaluation of information-theoretic similarity measures for content based retrieval and detection of masses in mammograms”, Medical Physics 34:140-150, 2007.
  • G. D. Tourassi, B. Harrawood, S. Singh, J. Y. Lo, “Information-theoretic CAD system in mammography: Entropy-based indexing for computational efficiency and robust performance”, Medical Physics 34:3193-3204, 2007.
  • Roehrdanz, R, Senechal, P, “Molecular analysis of ribosomal RNA spacer regions in geographically separated populations of the boll weevil (Anthonomus grandis)”. Genbank. Accession numbers: ER194205-EF194224, 2007.
  • Haixin Zhu; Jiping He; Bruce Kim, "Processing and characterization of dry-etch benzocyclobutene as substrate and packaging material for neural sensors", IEEE Transactions on Components and Packaging Technology 30(2): 2007
  • Ching-Yi Chen, Yanqing Tian, Yen-Ju Cheng, A. Cody Young, Jae-Won Ka, and Alex K.-Y. Jen "Two-photon absorbing block copolymer as a nanocarrier for porphyrin: Energy transfer and singlet oxygen generation in micellar aqueous solution." J. Am. Chem. Soc. 129:7220-7221, 2007.
  • Fei Huang, Yanqing Tian, Ching-Yi Chen, Yen-Ju Cheng, A. Cody Young, and Alex K.-Y. Jen, "Cross-conjugated polymers with large two-photon absorption cross-sections for metal ion sensing" J. Phys. Chem. C 111:10673-10681, 2007.
  • A. Cody Young, Joe Dragavon, Tim Strovas, Tim Molter, Lixin Zheng, Lloyd Burgess, Alex K.-Y. Jen, Mary E. Lidstrom, and Deirdre R. Meldrum, "Two-Photon Lithography of Platinum-Porphyrin Oxygen Sensors." IEEE Sensors Journal 7:931-936, 2007.
  • Yanqing Tian, Ching-Yi Chen, Yen-Ju Cheng, A. Cody Young, Neil M. Tucker, and Alex K.-Y. Jen "Hydrophobic Chromophores in Aqueous Micellar Solution Showing Large Two-Photon Absorption Cross Sections." Adv. Funct. Mater. 17:1691-1697, 2007.
  • Nie, L, Wu, G, Culley, DE, Scholten, JC and Zhang, WW, "Integrated Analysis of Transcriptomic and Proteomic Data: Challenges, Solution and New Applications", Critical Reviews in Biotechnology 27(2):63-75, 2007.
  • S.M Jiang, C.H. Li, W.W. Zhang, Y.H. Cai, Y.L. Yang, S. Yang, and W.H. Jiang, "Directed evolution and structural analysis of N-carbamoyl-D-amino acid amidohydrolase provide insights on recombinant protein solubility in Escherichia coli." Biochemical Journal 402(3):429-437, 2007.
  • Zhang, WW, Culley, DE, Nie, L, and Scholten, JC, "Comparative Transcriptome Analysis of Desulfovibrio Vulgaris Planktonic Culture and Mature Biofilm Grown on Iron Surface", Applied Microbiology and Biotechnology 76:447-457, 2007.
  • Scholten, JC, Nie, L, Culley, DE, Munn, KJ, Chow, L, Brockman, FJ and Zhang, WW, "Development and Assessment of Whole-genome Oligonucleotide Microarrays to Analyze a Mixed-cultural Anaerobic Microbial Community and Its Response to Oxidative Stress", Biochemical and Biophysical Research Communications 358(2):571-577, 2007.
  • Scholten, JC, Culley, DE, Brockman, FJ, Wu, G and Zhang, WW, "Evolution of Syntrophic Interaction Between Desulfovibrio Vulgaris and Methanosarcina Barkeri: An Ancient Horizontal Gene Transfer Event Involved", Biochemical and Biophysical Research Communications 352(1):48-54, 2007.
  • Molter, T. W.*, McQuaide, S. C., Zhang, M., Holl, M. R., Burgess L. W., Lidstrom M. E., and D. R. Meldrum, "Algorithm Advancements for the Measurement of Single Cell Oxygen Consumption Rates", IEEE Conference on Automation Science and Engineering, Scottsdale, Arizona, Sept 22-25, 2007. [won Spansion Best Paper Award for IEEE CASE 2007].
  • Ethan Saeedi, Samuel Kim, James Etzkorn, Deirdre Meldrum, Babak Parviz, "Automation and yield of micron-scale self-assembly processes," IEEE Conference on  Automation Science and Engineering, Scottsdale, Arizona, Sept 22-25, 2007. [won Best Student Paper Award for IEEE CASE 2007].
  • Chao, S-H, Carlson, R, Meldrum, DR, "Rapid Fabrication of Microchannels Using Microscale Plasma Activated Templating (μPLAT) Generated Water Molds", Lab on a Chip 7:641-643 (doi:10.1039/b618269k) 2007.
  • Koschwanez, JH, Carlson, RH and Meldrum, DR, "Easily Fabricated Magnetic Traps for Single-cell Applications, Review of Scientific Instruments 78:044301 (doi: 10.1063/1.2722400) 2007.
  • Jang, L-S, Chao, S-H, Holl, MR and Meldrum, DR, "Resonant Mode-hopping Micromixing", Sensors and Actuators A 138:179-186, 2007.
  • Chao, S-H, Carlson, R and Meldrum, DR, "PDMS Microlens Array Fabrication Using Water Droplets", Proceedings of the 11th International Conference on Miniaturized Systems for Chemistry and Life Sciences (microTAS), Paris, October 7-11, 2007.
  • Chao, S-H, Carlson, R and Meldrum, DR, "Fabrication of Lenses with High Light-collecting Ability using Water Molds", Proceedings of the 5th International ASME Conference on Nanochannels, Microchannels and Minichannels, Puebla, Mexico, June 18-20, 2007, ICNMM2007-30202.
  • Jaeyoung Choi, Prasad Saripalli, Deirdre Meldrum, and Ju Young Lee, "Development of a cellular absorptive tracers (CATs) for a quantitative characterization of microbial mass in flow systems," Bioresource Technology 98:3630-3633, 2007.
  • Kim, S, Saeedi, E, Meldrum, DR and Parviz, BA, "Self-assembled Heterogeneous Integrated Fluorescence Detection System," Proceedings of the 2nd Annual IEEE International Conference on Nano/Micro Engineered and Molecular Systems IEEE NEMS 2007, Bangkok, January 16-19, 2007, Paper No. 217.
  • Seriburi, P, Shastry, A, Ren, T, Gales, S, Bohringer, K and Meldrum, DR, "Using Electric Cell-substrate Impedance Sensing to Measure Changes in the Projected Area of Individual Cells", Proceedings of the 14th International Conference on Solid-state Sensors and Actuators (Transducers '07), Lyon, France, June 10-14, 2007.


2006

  • C.Y. Xu, X.X. Kong, L. Liu, F.Y. Su, S.Y. Kim, M. Taya, “Smart Glass Based on Electrochromic Polymers”, Proceedings of SPIE, 6168, 61681N, 2006.
  • Y. Q. Tian, K. Kamata, H. Yoshida, T. Iyoda, “Synthesis, Liquid-Crystalline Properties, and Supramolecular Nanostructures of Dendronized Poly(isocyanide)s and Their Precursors”, Chemistry-A European Journal. 12(2):584-591, 2006.
  • H. L. Yip, J. Y. Zou, H. Ma, Y. Q. Tian, N. M. Tucker, A. K. Y. Jen, “Patterning Robust Self-Assembled n-type Hexaazatrinaphthylene-based Nanorods and Nanowires by Micro-Contact Printing”, J. Am. Chem. Soc. 128(40):13042-13043, 2006.
  • T. D. Kim, J. D. Luo, J. Ka, S. Hau, Y. Q. Tian, Z. W. Shi, N. M. Tucker, S. H. Jang, J. Kang, A. Jen, “Ultra-Large and Thermally Stable Electro-Optic Activities from Diels-Alder Crosslinkable Polymers Containing Binary Chromophore Systems”, Adv. Mater. 18(22):3038-3042, 2006.
  • C. C. Yang, Y. Q. Tian, A. K.-Y. Jen, W. C. Chen, “New Environmental-Responsive Fluorescent NIPAA Copolymer and Its Application on DNA Sensing”, J. Polym. Sci. Polym. Chem. 44;5495-5504, 2006.
  • T. D. Kim, J. D. Luo, Y. Q. Tian, J. W. Ka, N. M. Tucker, M. Haller, J. W. Kang, A. K. Y. Jen, “Diels-Alder ‘Click Chemistry’ for Highly Efficient Electrooptic Polymers”, Macromolecules 39(5):1676-1680, 2006.
  • F. Huang, Y. H. Niu, M. S. Liu, X. H. Zhou, Y. Q. Tian, A. K. Y. Jen, “Efficient UV-blue Polymer Light-Emitting Diodes Based on Novel Fluorene-Based Non-conjugated Polymer”, Appl. Phys. Lett. 89:081104/1-3, 2006.
  • Roehrdanz, R., Senechal, P., Heilmann, L., “Histone and ribosomal RNA repetitive gene clusters linked in tandem array” (abstract), Society for Molecular Biology and Evolution. Presentation No. P132-B, 2006.
  • Nie, L, Wu, G and Zhang, WW, "Correlation of mRNA Expression and Protein Abundance Affected by Multiple Sequence Features Related to Translational Efficiency in Desulfovibrio Vulgaris: A Quantitative Analysis", Genetics 174(4):2229 - 2243, 2006.
  • Zhang, WW, Gritsenko, MA, Moore, RJ, Culley, DE, Nie, L, Camp II, DG, Smith, RD and Brockman, FJ, "LC-MS/MS Based Proteomic Analysis and Functional Inference of a Large Set of Hypothetical Proteins in Desulfovibrio Vulgaris", Biochemical and Biophysical Research Communications 349(4):1412-1419, 2006.
  • Zhang, WW, Gritsenko, MA, Moore, RJ, Culley, DE, Nie, L, Petritis, K, Strittmatter, EF, Camp II, DG, Smith, RD and Brockman, FJ, "Proteomic View of the Cellular Metabolism inDesulfovibrio Vulgaris Determined by Liquid Chromatography Coupled with Tandem Mass Spectrometry", Proteomics 6(15):4286-4299, 2006.
  • Zhang, WW, Culley, DE, Nie, L and Brockman, FJ, "DNA Microarray Analysis of Anaerobic Methanosarcina Barkeri Reveals Responses to Heat Shock and Air Exposure", Journal of Industrial Microbiology and Biotechnology 33(9):784-790, 2006.
  • Zhang, WW, Culley, DE, Hogan, M, Vitiritti, L and Brockman, FJ, "Oxidative Stress and Heat-shock Responses in Desulfovibrio Vulgaris by Genome-wide Transcriptomic Analysis", Antonie van Leeuwenhoek 90(1):41-55, 2006.
  • Nie, L, Wu, G, Brockman, FJ and Zhang, WW, "Integrated Analysis of Transcriptomic and Proteomic Data of Desulfovibrio Vulgaris: Zero-inflated Poisson Regression Models to Integrate and Interpret Microarray and Proteomic Data", Bioinformatics 22(13):1641-1647, 2006.
  • Culley, DE, Kovacik, WP, Brockman, FJ and Zhang, WW, "Evaluation and Optimization of RNA Isolation from Methanosarcina Barkeri for Oligonucleotide Microarray Analysis", Journal of Microbiological Methods 67(1):36-43, 2006.
  • Zhang, WW, Culley, DE, Scholten, JC, Hogan, Vitiritti, ML and Brockman, FJ, "Global Transcriptomic Analysis of Desulfovibrio Vulgaris Grown on Different Electron Donors", Antonie van Leeuwenhoek 89(2):221-237, 2006.
  • Wu, G, Nie, L and Zhang, WW, "Relation between mRNA Expression and Sequence Information in Desulfovibrio Vulgaris: Combinatorial Contributions of Upstream Motifs and Coding Sequences to the Variation in mRNA Abundance", Biochemical and Biophysical Research Communications 344(1):114-121, 2006.
  • Zhang, WW, Culley, DE, Wu, G and Brockman, FJ, "Two-component Signal Transduction Systems of Desulfovibrio Vulgaris: Structural and Phylogenetic Analysis and Deduction of Cognate Pairs", Journal of Molecular Evolution 62(4):473-487, 2006.
  • Wu, G, Nie, L and Zhang, WW, "Predicted Highly Expressed Genes in Nocardia Farcinica and the Implication to Its Primary Metabolism and Nocardial Virulence", Antonie van Leeuwenhoek 89(1):135-146, 2006.
  • Nie, L, Wu, G and Zhang, WW, "Correlation between mRNA and Protein Abundance in Desulfovibrio Vulgaris: A Multiple Regression to Identify Sources of Variations", Biochemical and Biophysical Research Communications 339(2):603-610, 2006.
  • Chao, S-H, Dougherty, WM and Sidles, JA, "The Design and Control of a Three-dimensional Piezoceramic Tube Scanner with an Inertial Slider", Review of Scientific Instruments 77(6):063710:1-7, 2006.
  • Pan, S, Shavit, G, Penas-Centeno, M, Xu, DH, Shapiro, L, Ladner, R, Riskin, E, Hol, W and Meldrum, DR, "Automated Classification of Protein Crystallization Images Using Support Vector Machines with Scale-Invariant Texture and Gabor Features", Acta Crystallographica D62(3):271-279, 2006.
  • Ngatchou, PN, Holl, MR, Fisher, CH, Saini, MS, Dong, J, Ren, TH, Pence, WH, Cunningham, DL, Moody, SE, Donaldson, DA and Meldrum, DR, "A Real-time qPCR Analyzer Compatible with High-throughput Automated Serial Processing in 5 mL Glass Capillaries", IEEE Transactions on Automation Science and Engineering 3(2):141-151, 2006.
  • Chao, S-H, Strovas, TJ, Wang, TM, Jones-Isaac, KA, Fink, SL, Cookson, BT and Meldrum, DR, "High-throughput, Long-term Imaging of Salmonella Infecting Macrophages in a Micro-environmental System", Proceedings of the 4th International ASME Conference on Nanochannels, Microchannels and Minichannels, pp. ICNMM2006-96212, 2006.
  • Fung, TH, Chao, S-H, Peach, JET and Meldrum, DR, "Liquid Crystal Thermography of an On-chip Polymerase Chain Reaction Micro-thermocycler", Proceedings of the 4th International ASME Conference on Nanochannels, Microchannels and Minichannels, pp. ICNMM2006-96175, 2006.
  • Koschwanez, J, Wolfe, J, Holl, M, Carlson, R and Meldrum, D "Automated, Biomechatronic System to Study Single Cell Aging", Proceedings of the IEEE/RAS-EMBS International Conference on Biomedical Robotics and Biomechatronics: BioRob2006, Pisa, Italy, February 20-22, 2006, pp. 959-964.
  • McQuaide, SC, Holl, MR, Burgess, L, Molter, T, Dragavon, J, Young, AC, Strovas, T, Anderson, J, Jen, A, Karlsgodt, B, Lidstrom, M and Meldrum, DR, "A Living Cell Array (LCA) for Multiparameter Cell Metabolism Studies", Proceedings of the IEEE/RAS-EMBS International Conference on Biomedical Robotics and Biomechatronics: BioRob2006, Pisa, Italy, February 20-22, 2006, pp. 971-976.
  • Chao, S-H, Ren, TH, Gales SA, Holl, MR, McQuaide, SC and Meldrum, DR, "Automated Digital Light Modulation Microscope (DLMM) for Living Cell Array Analysis: Pattern Recognition and Spatial Alignment'", Proceedings of the IEEE/RAS-EMBS International Conference on Biomedical Robotics and Biomechatronics, Pisa, Italy, February 20-22, 2006, pp. 977-981.
  • Chao, S-H, Strovas, TJ, Zhang, S, Jones-Isaac, KA and Meldrum, DR, "Single-cell Information Extraction and Viability Analysis Using Automated Microscopy", Proceedings of the IEEE International Conference on Automation Science and Engineering (CASE '06), Shanghai, October 7-10, 2006, pp. 33-38.
  • Chao, S-H, Carlson, R and Meldrum, DR, "Soft-lithography Without Using Photolithography", Proceedings of the 10th International Conference on Miniaturized Systems for Chemistry and Life Sciences (MicroTAS), Tokyo, November 5-9, 2006, pp. 672-674.
  • Koschwanez, JH, Carlson, RH and Meldrum, DR, "Single Cell Capture with Ferromagnetic Elements Grown on PDMS," Proceedings of the 10th International Conference on Miniaturized Systems for Chemistry and Life Sciences (MicroTAS), Tokyo, November 5-9, 2006, No. 1727.
  • Lutz, BR, Chen, J, Schwartz, DT and Meldrum, DR, "Trapping & Chemical Dosing of Suspended Cells in Hydrodynamic Tweezer Arrays," Proceedings of the 10th International Conference on Miniaturized Systems for Chemistry and Life Sciences (MicroTAS), Tokyo, November 5-9, 2006.
  • Chao, S-H, Holl, MR, McQuaide, SC and Meldrum, DR, "Oxygen Concentration Measurement with a Phosphorescence Lifetime Based Micro-sensor Array Using a Digital Light Modulation Microscope", SPIE Volume 6088, Imaging, Manipulation and Analysis of Biomolecules, Cells, and Tissues, San Jose, CA, January 22-27, 2006: 60880S-1.


2005

  • K. Claborn, A.S. Chu, S.H. Jang, F.Y. Su, W. Kaminsky, B. Kahr. Circular Extinction Imaging: Determination of the Absolute Orientation of Embedded Chromophores in Enantiomorphously Twinned LiKSO4 Crystals. Crystal Growth & Design, 5(6), 2117-2123, 2005
  • Roehrdanz, R., Senechal, P., Heilman, L. (2005). Ribosomal RNA spacer diversity in the boll weevil (abstract). ESA Annual Meeting and Exhibition. Presentation No. D0520.
  • Katsoulidis, E, Li, Y, Yoon, P, Sassano, A, Altman, J, Kannan-Thulasiraman, P, Balasubramanian, L, Parmar, S, Varga, J, Tallman, MS, Verma, A and Platanias, LC, "Role of the p38 MAP Kinase Pathway in Cytokine-mediated Hematopoitic Suppression in Myelodysplastic Syndromes", Cancer Research 65(19):9029-9037, 2005.
  • Katsoulidis, E, Li, Y, Mears, H and Platanias, LC, "The p38 Mitogen-activated Protein Kinase Pathway in Interferon Signal Transduction", Journal of Interferon and Cytokine Research 25(12):749-756, 2005.
  • Li, Y, Batra, S, Sassano, A, Majchrzak, B, Levy, DE, Gaestel, M, Fish, EN, Davis, RJ and Platanias, LC, "Activation of Mitogen-activated Protein Kinase Kinase (MKK) 3 and MKK6 by Type I interferons", Journal of Biological Chemistry 280(11):10001-10010, 2005.
  • Kaur, S, Parmar, S, Smith, J, Katsoulidis E, Li, Y, Sassano, A, Majchrzak, B, Uddin, S, Tallman, MS, Fish, EN and Platanias, LC, "Role of Protein Kinase C-delta (PKC-delta) in the Generation of the Effects of IFN-alpha in Chronic Myelogenous Leukemia Cells", Experimental Hematology 33(5):550-557, 2005.
  • Lal, L, Li, Y, Smith, J, Sassano, A, Uddin, S, Parmar, S, Tallman, MS, Minucci, S, Hay, N and Platanias, LC, "Activation of the p70 S6 Kinase by All-trans-retinoic Acid in Acute Promyelocytic Leukemia Cells", Blood 105(4):1669-1677, 2005.
  • Travis Sherwood, Cody Young, Jocelyn Takayesu, Alex K.-Y. Jen, Larry Dalton, and Antao Chen "Polymer ring resonator made by two-photon polymerization and vertically coupled to a side-polished optical fiber." SPIE (Organic Photonic Materials and Devices VII), 2005, 5724, 356-367.
  • Wu, G, Culley, DE and Zhang, WW, "Predicted Highly Expressed Genes in Two Streptomyces Genomes and the Implications for Primary and Secondary Metabolisms", Microbiology 151(7):2175-2187, 2005.
  • Zhang, WW and Shi, L, "Distribution and Evolution of Multiple-step Phosphorelay in Prokaryotes: Lateral Domain Recruitment Involved in the Formation of Hybrid-type Histidine Kinases", Microbiology 151(7):2159-2173, 2005.
  • Chao, S-H, Holl, MR, Koschwanez, JH, Carlson, RH, Jang, L-S and Meldrum, DR, "Velocity Measurement in Microchannels With a Laser Scanning Microscope and Particle Linear Image Velocimetry", Microfluidics and Nanofluidics 1(2):155-160, 2005.
  • Jang, L-S, Chao, S-H, Holl, MR and Meldrum, DR, "Microfluidic Circulatory Flows Induced by Resonant Vibration of Membranes", Sensors and Actuators A 122(1):141-148, 2005.
  • Chao, S-H, Holl, MR, Koschwanez, JH, Seriburi, P and Meldrum, DR, "Scaling for Microfluidic Mixing", Proceedings of the 3rd International ASME Conference on Microchannels and Minichannels, ICMM2005-75236, 2005.
  • Seriburi, P, Shastry, A, Van't Wout, A, Mittler, J, Chao, S-H, Koschwanez, J and Meldrum, D, "Lower Limits of Detection for Single Biological Particles Using Impedance Spectroscopy", Proceedings of the 2nd ASME Conference on Integrated Nanosystems: Design, Synthesis & Applications (NANO2005-87060), Berkeley, CA, September 15-16, 2005.
  • Barrettino, D, Martin, ME, McQuaide, S and Meldrum, DR, "CMOS Readout and Control Architecture for Single-cell Real-time Microsystems", Proceedings of the IEEE International Symposium on Circuits and Systems (doi: 10.1109/ISCAS.2005.1465705), Kobe, Japan, May 23-26, 2005, Volume 5, pp. 4795-4798.
  • Miller, AK, Stanton, ML, Sanchez, CA, Li, X, McQuaide, SC, Reid, BJ, Meldrum, DR, Paulson, TG and Holl, MR, "Biopsy Preparation for Flow Analysis Using Microfabricated Disaggregation Blades", Proceedings of the IEEE Conference on Automation Science and Engineering (doi: 10.1109/COASE.2005.1506736), Edmonton Alberta, August 1-2, 2005, pp. 1-6.
  • Meldrum, DR, Holl, MR, Fisher, CH, Saini, MS, McGuire, SK, Ren, TTH, Pence, WH, Moody, SE, Cunningham, DL, Donaldson, DA and Wiktor, PJ, "Sample Preparation in Glass Capillaries for High-throughput Biochemical Analyses", Proceedings of the IEEE Conference on Automation Science and Engineering (doi: 10.1109/COASE.2005.1506737), Edmonton Alberta, August 1-2, 2005, pp. 7-12.
  • Koschwanez, J, Holl, M, Carlson, R, McMurray, M, Gottschling, D and Meldrum, D, "Automated Lifetime Analysis of a Single Yeast Cell", Proceedings of the IEEE Conference on Automation Science and Engineering (doi: 10.1109/COASE.2005.1506738), Edmonton, Alberta, August 1-2, 2005, pp. 13-18.
  • Ngatchou, P, Fisher, C, Saini, M, El-Sharkawi, M and Meldrum, DR, "Application of Neural Network Encoder for Gene Quantitation from Real-time Polymerase Chain Reaction Experiments", Proceedings of the IEEE International Workshop on Genomic Signal Processing and Statistics (GENSIPS 2005), Newport, Rhode Island, May 22-24, 2005.
  • Wang, K, Sinclair, M, Böhringer, KF and Meldrum, D, "Using Nano Polystyrene Beads as Dampers in Micro-Scanning Mirrors for Photodynamic Therapy", Proceedings of the Micro Nano Breakthrough Conference, Portland, Oregon, July 25-28, 2005.
  • Carlson, R, Koschwanez, J and Meldrum, DR, "Novel Material Patterning for Electronic, Magnetic, and Optical Components on PDMS", Ninth International Conference on Miniaturized Systems for Chemistry and Life Sciences (µTAS)", Boston, Massachusetts, October 9-13, 2005.
  • Carlson, R and Meldrum, DR, "Electrostatic Actuators Composed of Extensible Graphite-PDMS Composite Membranes", Ninth International Conference on Miniaturized Systems for Chemistry and Life Sciences (µTAS), Boston, October 9-13, 2005.
  • Chao, S-H, Holl, MR, Jang, L-S and Meldrum, DR, "Three-dimensional Microfluidic Flow Field Characterization With Partical Image Velocimetry and Laser Scanning Confocal Microscopy," Ninth International Conference on Miniaturized Systems for Chemistry and Life Sciences (mTAS), Boston, October 9-13, 2005, pp. 109-111
  • Lutz, B and Meldrum, DR, "Hydrodynamic Tweezers: Single-cell Trapping Arrays for Cell Dynamics", Ninth International Conference on Miniaturized Systems for Chemistry and Life Sciences (mTAS), Boston, October 9-13, 2005.
  • Seriburi, P, Young, AC, Witkowski, M, Carlson, RH and Meldrum, DR, "Fabrication of PDMS Nanostructures with a Microstereolithographic Master", Nanoscale Science and Technology Workshop, University of Washington, Seattle, WA, September 20-21, 2005.
  • Zhu, H, He, J and Kim, B, "Surface Micromachined Neural Sensors with Integrated Double Side Recording on Dry-etch Benzocyclobutene (BCB) Substrate", Proceedings of the 27th Annual International Conference of the IEEE Engineering in Medicine and Biology Society, Shanghai, September 1-4, 2005, pp. 526-529.


2004

  • Y. Q. Tian, E. Akiyama, Y. Nagase, A. Kanazawa, O. Tsutsumi, T. Ikeda. Synthesis and investigation of photophysical and photochemical properties of new side group liquid crystalline polymers containing coumarin moieties. J. Mater. Chem. 14, 3524-3531, 2004
  • J. Luo, M. Haller, H. Ma, S. Liu, T. Kim, Y. Q. Tian, B. Chen, S. Jang, L. Dalton, Alex. K-Y. Jen. Nanoscale Architectural Control and Macromolecular Engineering of Nonlinear Optical Dendrimers and Polymers for Electro-Optics. J. Phys. Chem. B, 108, 8523-8530, 2004
  • Mori, Y, Ishida, W, Bhattacharyya, S, Li, Y, Platanias, LC and Varga, J, "Selective Inhibition of Activin Receptor-like Kinase 5 Signaling Blocks Profibrotic Transforming Growth Factor Beta Responses in Skin Fibroblasts", Arthritis and Rheumatism 50(12):4008-4021, 2004.
  • Kambhampati, S, Verma, A, Li, Y, Parmar, S, Sassano, A and Platanias, LC, "Signalling Pathways Activated by All-trans-retinoic Acid in Acute Promyelocytic Leukemia Cells", Leukemia and Lymphoma 45(11):2175-2185, 2004.
  • Srivastava, KK, Batra, S, Sassano, A, Li, Y, Majchrzak, B, Kiyokawa, H, Altman, A, Fish, EN and Platanias, LC, "Engagement of Protein Kinase C-theta in Interferon Signaling in T-cells", Journal of Biological Chemistry 279(29):29911-29920, 2004.
  • Li, Y, Srivastava, KK and Platanias, LC, "Mechanisms of Type I Interferon Signaling in Normal and Malignant Cells", Archivum Immunologii et Therapiae Experimentalis 52(3):156-163, 2004.
  • Parmar, S, Katsoulidis, E, Verma, A, Li, Y, Sassano, A, Lal, L, Majchrzak, B, Ravandi, F, Tallman, MS, Fish, EN and Platanias, LC, "Role of the p38 Mitogen-activated Protein Kinase Pathway in the Generation of the Effects of Imatinib Mesylate (STI571) in BCR-ABL-expressing Cells", Journal of Biological Chemistry 279(24):25345-25352, 2004.
  • Li, Y, Sassano, A, Majchrzak, B, Deb, DK, Levy, DE, Gaestel, M, Nebreda, AR, Fish, EN and Platanias, LC, "Role of p38alpha Map Kinase in Type I Interferon Signaling", Journal of Biological Chemistry 279(2):970-979, 2004.
  • Zhang, WW and Shi, L, "Evolution of Mg (II) or Mn (II)-dependent Protein Phosphatases in Streptomyces: Early Diverge of the Catalytic Domains and Lateral Recruitment of Additional Sensory Domains", Microbiology 150(12):4189-4197, 2004.
  • Shi, L and Zhang, WW, "Comparative Analysis of Eukaryotic-type Protein Phosphatases in Two Streptomyces Genomes", Microbiology 150(7):2247-2256, 2004.
  • Chao, S-H, Dougherty, WM, Garbini, JL and Sidles, JA, "Nanometer-scale Magnetic Resonance Imaging", Review of Scientific Instruments 75(5):1175-1181, 2004.
  • Koschwanez, J, Holl, MR, Marquardt, B, Dragavon, J, Burgess, L and Meldrum, DR, "Identification of Budding Yeast Using a Fiber-optic Imaging Bundle", Review of Scientific Instruments 75(5):1363-1365, 2004.
  • Hu, J, Tam, K and Johnson, RH, "A Simple Derivation and Analysis of a Helical Cone Beam Tomographic Algorithm for Long Object Imaging Via a Novel Definition of Region of Interest", Physics in Medicine and Biology 49(2):205-225, 2004.
  • Li, M, Kudo, H, Hu, J and Johnson, RH, "Improved Iterative Algorithm for Sparse Object Reconstruction and its Performance: Evaluation with Micro-CT Data", IEEE Transactions on Nuclear Science 51:659-666, 2004.
  • Koschwanez, J and Meldrum, DR, "Picture Perfect", OE Magazine, 4, 28-30, Nov/Dec 2004.
  • Holl, MR, Fung, TH, Ball, GI, McQuaide, SC, Chao, S-H, Coleman-Lerner, A, Resnekov, O, Hawley, S, Koschwanez, JH, Yu, R, Endy, D, Brent, R and Meldrum, DR, "Fluidic Systems for Realtime Microscopy Based Stimulus Response Experiments", 2nd Annual Alpha Project Research Symposium, Molecular Sciences Institute, Berkeley, California, June, 2004.
  • Chao, S-H, Holl, MR, Koschwanez, JH, Carlson, RH, Jang, L-S and Meldrum, DR, "Velocity Measurement in Microchannels with a Laser Scanning Microscope and Particle Linear Image Velocimetry", ASME 2nd International Conference on Microchannels and Minichannels, Rochester, New York, June 17-19, 2004, pp. 925-930.
  • Fung, TH, Ball, GI, McQuaide, SC, Chao, S-H, Coleman-Lerner, A, Holl, MR and Meldrum, DR, "Microprinting of On-chip Cultures: Patterning of Yeast Cell Microarrays Using Concanavalin-A Adhesion", Proceedings of the ASME International Mechanical Engineering Congress, Anaheim, California, November 13-20, 2004, pp. 373-374.
  • Banani, N, Lee, LA, Holl, MR, Troll, M, Marquardt, B Troll, M and Wilson, DM, "SLAP: Design Software for Optimization of Fluorescence Analysis Systems", Proceedings of the 26th Annual International Conference of the IEEE Engineering in Medicine and Biology Society, San Francisco, September 1-5, 2004, pp. 2086-2089.
  • Koschwanez, J, Holl, MR, McMurray, M, Gottschling, D and Meldrum, DR, "Automation of Yeast Pedigree Analysis", Proceedings of the IEEE International Conference on Robotics and Automation, New Orleans, April 27-30, 2004, pp. 1475-1480.
  • Chao, S-H, Holl, MR, Koschwanez, JH, Carlson, RH and Meldrum, DR, "Transient Microfluidic Velocity Measurement and Particle Characterization with a Laser Scanning Confocal Microscope", 8th International Conference on Miniaturized Systems for Chemistry and Life Sciences, MicroTAS 2004, Special Publication, Royal Society of Chemistry, Volume 296, ISBN/ISSN 0260-6291, pp. 641-643, 2004.
  • Zhu, H, He, J and Kim, B, "High Yield BCB Based Neural Implant for Simultaneous Intra- and Extra-cortical Recording", Proceedings of the 26th Annual International Conference of the IEEE Engineering in Medicine and Biology Society, San Francisco, September 1-4, 2004, pp. 4341-4344.
  • Singh, A, Zhu, H and He, J "Improving Mechanical Stiffness of Coated Benzocyclobutene (BCB) Based Neural Implant", Proceedings of the 26th Annual International Conference of the IEEE Engineering in Medicine and Biology Society, San Francisco, September 1-4, 2004, pp. 4298-4301.


2003

  • F.Y. Su, T. Iwata, F. Tanaka, Y. Doi. Crystal Structure and Enzymatic degradation of Poly(4-hydroxybutyrate). Macromolecules, 36(17), 6401-6409, 2003
  • Y. Q. Tian, Y. Li, T. Iyoda. Densely grafted polyisocyanides synthesized by two types of polymerization techniques. J. Polym. Sci. Polym. Chem. 41, 1871-1880, 2003
  • Y. Q. Tian, X. X. Kong, Y. Nagase, T. Iyoda. Photocrosslinkable liquid crystalline block copolymers with coumarin units synthesized with atom transfer radical polymerization. J. Polym. Sci. Polym. Chem. 41, 2197-2206, 2003
  • Y. Q. Tian, E. Akiyama, Y. Nagase. Liquid crystalline cyclic tetramethyltetrasiloxanes containing coumarin moieties. J. Mater. Chem. 13, 1253-1258, 2003
  • K. Watanabe, Y. Q. Tian, H. Yoshida, S. Asaoka, T. Iyoda. Synthesis and nanostructures of amphiphilic liquid crystalline block copolymers with azobenzene moieties. Transactions of the Materials Research Society of Japan 28(3), 553-556, 2003
  • Nolan, B.P., Senechal, P., Waqar, S., Myers, J., Standley, C.A, Standley, P.R. (2003). Altered insulin-like growth factor-1 and nitric oxide sensitivities in hypertension contribute to vascular hyperplasia. Am J Hypertens (2003) 16, 393-400.
  • Nolan, B.P., Senechal, P., Waqar, S., Standley, C.A., Standley, P.R. (2003). Altered vascular smooth muscle cell (VSMC) sensitivity to the proliferative effects if IGF-1 and nitric oxide (NO) in young spontaneously hypertensive rats (SHR) (abstract). Conference on Arteriosclerosis, Thrombosis, and Vascular Biology, 2002:22:878.
  • Kambhampati, S, Li, Y, Verma, A, Sassano, A, Majchrzak, B, Deb, DK, Parmar, S, Giafis, N, Kalvakolanu, DV, Rahman, A, Uddin, S, Minucci, S, Tallman, MS, Fish, EN and Platanias, LC, "Activation of Protein Kinase C-delta by All-trans-retinoic Acid", Journal of Biological Chemistry 278(35):32544-32551, 2003.
  • Zhang, WW, Needham, DL, Coffin, M, Rooker, A, Hurban, P, Tanzer, MM and Shuster, JR, "Microarray Analyses of the Metabolic Responses of Saccharomyces Cerevisiae to Organic Solvent Dimethyl Sulphoxide (DMSO)", Journal of Industrial Microbiology and Biotechnology 30(1): 57-69, 2003. Featured in: Willis, RC, "Yeast of Burden", Modern Drug Discovery 4:11, 2003.
  • Zhang, WW, "Molecular Regulation of Secondary Metabolism in Actinomycetes", In: Liu ZH and Jiang, CL (Eds.), Modern Molecular Biology and Biotechnology of Actinomycetes, Science Press of China, Beijing, pp.118-160, 2003.
  • Lidstrom, ME and Meldrum, DR, "Life-on-a-Chip", Nature Reviews Microbiology 1(2): 158-164, 2003.
  • Sidles, JA, Garbini, JL, Dougherty, WM and Chao, S-H, "The Classical and Quantum Theory of Thermal Magnetic Noise, with Applications in Spintronics and Quantum Microscopy", Proceedings of the IEEE 91(5): 799-816, 2003.
  • Meldrum, DR, Fisher, CH, Moore, MP, Saini, M, Holl, MR, Pence, WH, Moody, SE, Cunningham, DL and Wiktor, PJ, "ACAPELLA-5K, A High-throughput Automated Genome and Chemical Analysis System", Proceedings of the IEEE/RSJ International Conference on Intelligent Robots and Systems (IROS 2003), Las Vegas, October 27-31, 2003, Volume 3, pp. 2321-2328.
  • Meldrum, D, Holl, M, Seriburi, P, Phillips, S, Chao, S-H, Jang, L and Kosar, F, "MEMS Modules for Life-on-a-chip", Proceedings of the 2003 IEEE International Symposium on Circuits and Systems (ISCAS '03)," Bangkok, Thailand, May 25-28, 2003, pp. III-638-III-641.
  • Lee, K, Singh, A, Zhu, H, Coryell, G, Olson, B, Kim, B, Raupp, G and He, J, "Fabrication of Implantable Polyimide Based Neural Implants with Flexible Regions to Accommodate Micro-movement", Proceedings of the 12th International IEEE Conference on Transducers, Solid-state Sensors, Actuators and Microsystems, Boston, June 8-12, 2003, pp. 1221-1224.
  • Wietholt, C, Molthen, RC, Johnson, RH, Dawson, CA and Clough, AV, "SPECT Imaging of Pulmonary Blood Flow in a Rat", Proceedings of the SPIE Volume 5031, Physiology and Function: Methods, Systems, and Applications, San Diego, February 15-20, 2003, pp. 252-261.


2002

  • Y. Q. Tian, K. Watanabe, X. Kong, J. Abe, T. Iyoda. Synthesis, Nanostructures, and Functionality of Amphiphilic Liquid Crystalline Block Copolymers with Azobenzene Moieties. Macromolecules, 35, 3739-3747, 2002.
  • Li, Y and Leisner, SM, "Multiple Domains Within the Cauliflower Mosaic Virus Gene VI Product Interact with the Full-length Protein", Molecular Plant-microbe Interactions 15(10):1050-1057, 2002.
  • Zerbe, K, Pylypenko, O, Vitali, F, Zhang, WW, Rousett, S, Heck, M, Vrijbloed, JW, Bischoff, D, Süssmuth, RD, Wohlleben, W, Robinson, JA and Schlichting, I, "Crystal Structure of OxyB, a Cytochrome P450 Implicated in an Oxidative Phenol Coupling Reaction during Vancomycin Biosynthesis", Journal of Biological Chemistry 277(49):47476-47485, 2002.
  • Wang, W, Zhang, WW, Chen, H, Chiao, JS, Zhao, GP and Jiang, WH, "Molecular and Biochemical Characterization of a Novel Two-component Signal Transduction System amrA-amkA Involved in the Secondary Metabolism in Rifamycin SV-producing Amycolatopsis Mediterranei U32", Archives of Microbiology 178(5):376-386, 2002.
  • Wang, W, Zhang, WW, Gao, J, Chiao, JS, Zhao, GP and Jiang, WH, "MoeA, an Enzyme in Molybdopterin Synthesis Pathway, is Required for the Rifamycin SV Production in Amycolatopsis Mediterranei U32", Applied Microbiology and Biotechnology 60(1-2):139-146, 2002.
  • Yao, Y, Zhang, WW, Chiao, JS, Jiang, WH and G.P. Zhao, "Efficient Isolation of Total RNA from Antibiotic-producing Bacterium Amycolatopsis Mediterranei", Journal of Microbiological Methods 51(2):191-195, 2002.
  • Meldrum, DR and Holl, MR, "Microscale Bioanalytical Systems", Science 297(5584): 1197-1198, 2002.
  • Lipscomb, RC, Clemmens, J, Hanein, Y, Holl, MR, Vogel, V, Ratner, BD, Denton, DD and Bohringer, KF, "Controlled Microtubules Transport on Patterned Non-fouling Surfaces", Proceedings of the 2nd Annual International IEEE-EMBS Special Topic Conference on Microtechnologies in Medicine & Biology, Madison, Wisconsin, May 2-4, 2002, pp. 21-26.
  • Jang, L-S, Meldrum, DR and Holl, MR, "An Active Mixer for Microscale DNA Purification and Sequencing Reaction Clean-up", Proceedings of the 6th International Conference on Miniaturized Chemical and Biochemical Analysis Systems (MicroTAS 2002), Nara, Japan, November 3-7, 2002, pp. 239-241.
  • Kosar, TF, Meldrum, DR and Holl, MR, "Synchronization of Bacterial Cultures in Microsystem", Proceedings of the 6th International Conference on Miniaturized Chemical and Biochemical Analysis Systems (MicroTAS 2002), Nara, Japan, November 3-7, 2002, pp. 835-837.
  • Li, M, Kudo, H, Hu, J and Johnson, R, "Sparse Object Reconstruction from a Limited Number of Projections using the Linear Programming", Proceedings of the IEEE Nuclear Science Symposium and Medical Imaging Conference, Norfolk, Virginia, November 10-16, 2002, Volume 2, pp. 989-993.
  • Hanger, CC, Haworth, ST, Mothen, RC and Dawson, CA and Johnson, RH, "Simple Conebeam Backprojection for Robust Arterial Tree Skeletonization in 3D Micro-CT", Proceedings of the IEEE Nuclear Science Symposium and Medical Imaging Conference, Norfolk, Virginia, November 10-16, 2002, Volume 2, pp. 1003-1007.
  • Hu, J, Johnson, RH, Molthen, RC, Haworth, ST and Dawson, CA, "Quasi-exact Helical Cone Beam Reconstruction for Micro-CT", Proceedings of the IEEE International Symposium on Biomedical Imaging, Washington D.C., July 7-10, 2002, pp. 681-684.


2001

  • F.Y. Su, T. Iwata, K. Sudesh, Y. Doi. Electron and X-ray diffraction study on poly(4-hydroxybutyrate). Polymer Communication, 42(21), 8915-8918, 2001
  • T. Iwata, Y. Furuhashi, F.Y. Su, Y. Doi. Single crystal morphologies of biodegradable aliphatic polyesters. RIKEN Review, 42, 15-18, 2001
  • W.K. Lee, T. Iwata, F.Y. Su, Y. Furuhashi, Y. Doi. Visualization of the recrystallization of solution-grown poly[(R)-3-hydroxybutyrate] lamellar crystals. Macromolecular Rapid Communications 22(8), 629-632, 2001
  • Cropp, TA, Chen, S, Liu, HB, Zhang, WW and Reynolds, KA, "Genetic Approaches for Controlling Ratios of Related Polyketide Products in Fermentation Processes", Journal of Industrial Microbiology and Biotechnology 27(6):368-377, 2001.
  • Yang, L, Zhang, WW, Chiao, JS, Zhao, GP and Jiang, WH, "An Eukaryotic-like Serine/Threonine Protein Kinase Involved in the Carbon-dependent Pigment Formation in Rifamycin SV Producing Amycolatopsis Mediterranei U32", Biochemical and Biophysical Research Communications 284(2):357-362, 2001.
  • Zhang, WW and Reynolds, KA, "MeaA, a Putative B12 Dependent Mutase, Provides Methylmalonyl-CoA for Monensin A Production in Streptomyces Cinnamonesis", Journal of Bacteriology 183(6):2071-2080, 2001.
  • Meldrum, DR, "Sequencing Genomes and Beyond", Science 292(5516): 515-517, 2001.
  • Holl, MR, Garbini, JL, Murray, WR and Kumar, V, "A steady-state Mass Balance Model of the Polycarbonate-CO2 System Reveals a Self-regulating Cell Growth Mechanism in the Solid-state Microcellular Process", Journal of Polymer Science, Part B: Polymer Physics 39(8): 868-880, 2001.
  • Wang, W, Holl, MR and Schwartz, DT, "Rapid Prototyping of Masks for Through-mask Electrodeposition of Thick Metallic Components", Journal of the Electrochemical Society 148(5): c363-c368, 2001.
  • Karau, KL, Johnson, RH, Molthen, RC, Dhyani, AH, Haworth, ST, Hanger, CC, Roerig, DL and Dawson, CA, "Microfocal X-ray CT Imaging and Pulmonary Arterial Distensibility in Excised Rat Lungs", American Journal of Physiology (Heart Circ. Physiol.) 281(3): H1447-H1457, 2001.
  • Karau, K, Molthen, RC, Dhyani, AH, Haworth, ST, Hanger, CC, Roerig, DL, Johnson, RH and Dawson, CA, "Pulmonary Arterial Morphometry from Microfocal X-ray Computed Tomography", American Journal of Physiology (Heart Circ. Physiol.) 281(6): 2747-2756, 2001.
  • Jang, L-S, Saini, MS, Holl, MR and Meldrum, DR, "Purification of DNA Sequencing Products with a Model Compound in a High-throughput Microfluidic Format, the ACAPELLA-5K", In: Micro Total Analysis Systems 2001, Kluwer Academic Publishers, Norwell, Massachusetts, 2001, pp. 115-116.
  • Mann, TP, Holl, MR, Saini, MS, Fisher, CH, Pence, WH, Moody, SE, Cunningham, DL, Sabath, DE and Meldrum, DR, "Real-time Fluorescence Detection of DNA in 5 µL Capillary Channels for Minimal Residual Disease Quantification Using the ACAPELLA-5K High-Throughput Automated Analysis System", In: Micro Total Analysis Systems 2001, Kluwer Academic Publishers, Norwell, Massachusetts, 2001, pp. 575-576.
  • Meldrum, DR, Pence, WH, Moody, SE, Cunningham, DL, Holl, MR and Wiktor, PJ, "Automated Microfluidics for Genomics", Proceedings of the 23rd Annual International Conference of the IEEE Engineering in Medicine and Biology Society, Istanbul, Turkey, October 25-28, 2001, Volume 3, pp. 2923-2926.
  • Meldrum, DR, Pence, WH, Moody, SE, Cunningham, DL, Holl, M, Wiktor, PJ, Saini, M, Moore, MP, Jang, L-S, Kidd, M, Fisher, C and Cookson, A, "Automated, Integrated Modules for Fluid Handling, Thermal Cycling and Purification of DNA Samples for High Throughput Sequencing and Analysis", Proceedings of the 2001 IEEE/ASME International Conference on Advanced Intelligent Mechatronics (AIM'01), Como, Italy, July 8-11, 2001, pp. 2:1211-1219.
  • Hu, J, Johnson, RH and Dawson, CA, "Practical Helical Cone Beam Algorithm for the Long Object Problem", Proceedings of the 6th International Meeting on Fully Three-dimensional Image Reconstruction in Radiology and Nuclear Medicine, Pacific Grove, California, October 30-November 2, 2001, pp. 11-14.
  • Karau, KL, Molthen, RC, Johnson, RH, Dhyani, AH, Haworth, ST and Dawson, CA, "Pulmonary Arterial Remodeling Revealed by Microfocal X-ray Tomography", Proceedings of the SPIE Volume 4321, Physiology and Function from Multidimensional Images, San Diego, February 17-23, 2001, pp. 282-287.


2000

  • Zhang, WW, Li, L, Jiang, WH, Zhao, GP, Yang, YL and Chiao, JS, "A Novel Transmembrane Serine/Threonine Protein Kinase from a Rifamycin SV-producing Amycolatopsis Mediterranei U32", European Journal of Biochemistry 267(12):3744-3752, 2000.
  • Zhang, WW, Jiang, WH, Zhao, GP, Yang, YL and Chiao, JS, "Expression, Purification and Kinetic Analysing of Aspartokinase and Asparate Semialdehyde Dehydrogenase of Amycolatopsis Mediterranei in Escherichia Coli", Applied Microbiology and Biotechnology 54(1):52-58, 2000.
  • Meldrum, DR, Evensen, HT, Pence, WH, Moody, SE, Cunningham, DL and Wiktor, PJ, "ACAPELLA-1K: A Capillary-based Submicroliter Automated Fluid Handling System for Genome Analysis", Genome Research 10(1): 95-104, 2000.
  • Meldrum, DR, "Automation for Genomics, Part 1: Preparation for Sequencing", Genome Research 10(8): 1081-1092, 2000.
  • Meldrum, DR, "Automation for Genomics, Part 2: Sequencers, Microarrays, and Future Trends", Genome Research 10(9): 1288-1303, 2000.
  • Meldrum, DR, Evensen, HT, Pence, WH, Moody, SE, Cunningham, DL and Wiktor, PJ, "ACAPELLA-1K: A Biomechatronic Fluid Handling System for Genome Analysis that Processes 1000 Samples in 8 Hours", IEEE/ASME Transactions on Mechatronics 5(2): 212-220, 2000.
  • Dougherty, WM, Bohringer, KJ, Chao, S-H, Garbini, JL, Jensen, SE and Sidles, JA, "The Bloch Equations in High-gradient Magnetic Resonance Force Microscopy: Theory and Experiment", Journal of Magnetic Resonance 149: 106–119, 2000.
  • Macounová, K, Cabrera, CR, Holl, MR and Yager, P, "Generation of Natural pH Gradients in Microfluidic Channels for use in Isoelectric Focusing", Analytical Chemistry 72(16): 3745-3751, 2000.
  • Hsieh, J, Molthen, RC, Dawson, CA and Johnson, RH, "An Iterative Approach to Beam Hardening Correction in Cone Beam CT", Medical Physics 27(1): 23-29, 2000.
  • Meldrum, DR and Moody, SE, "Automating High Throughput Fluid Sample Handling for Biotechnology and Chemistry", Proceedings of the 2000 IEEE International Conference on Robotics and Automation, San Francisco, April 24-28, 2000, pp. 198-205.
  • Cabrera, CR, Macounová, K, Holl, MR and Yager, P, "Use of Isoelectric Focusing for Sample Preconditioning in a Microfluidic Electrochemical Flow Cell", 1st Annual International IEEE-EMBS Special Topic Conference on Microtechnologies in Medicine and Biology, Lyon, France, October 12-14, 2000, pp. 357-360.
  • Crippen, SM, Holl, MR and Meldrum, DR, "Examination of Dielectrophoretic Behavior of DNA as a Function of Frequency from 30Hz to 1MHz Using a Flexible Microfluidic Test Apparatus", Proceedings of the microTAS 2000 Symposium, Enshede, The Netherlands, May 14-18, 2000.
  • Holl, MR, Macounová, K and Yager, P, "A Microfluidic Sedimentation Particulate Capture Device with Internal Degassing Membranes", Proceedings of the microTAS 2000 Symposium, Enshede, The Netherlands, May 14-18, 2000, pp. 319-321.
  • Taylor, C, Meldrum, DR and Jacobson, L, "Results of the On-line Implementation and Testing of a Fuzzy Logic Ramp Metering Algorithm", Proceedings 79th Annual Meeting of the Transportation Research Board, Washington, DC, January 2000.
  • Johnson, RH, Karau, KL, Haworth, ST and Dawson, CA, "Vascular Functional Genomics with 3D X-ray Microimaging", Proceedings of Quantitative Challenges in the Post-Genomic Sequence Era, San Diego, January 11-15, 2000, p. 127.
  • Johnson, RH, Karau, KL, Molthen, RC, Haworth, ST and Dawson, CA, "Blowing Up the Stiff Balloon: X-ray Microtomography Reveals Decrease in Arterial Distensibility in Pulmonary Hypertension", Microscopy and Microanalysis, 2000, Philadelphia, August 14-17, 2000.
  • Johnson, RH, "Conebeam Micro-CT Applied to Vascular and Bone Structure Characterization", Proceedings of the 5th National Conference for Nuclear Applications, Rio de Janeiro, October 15-20, 2000, pp. 15-18.
  • Johnson, RH, Karau, KL, Molthen, RC, Haworth, ST and Dawson, CA, "Micro-CT Image-derived Metrics Quantify Arterial Wall Distensibility Reduction in a Rat Model of Pulmonary Hypertension", Proceedings of the SPIE Volume 3978, Physiology and Function from Multidimensional Images, San Diego, February 12-18, 2000, pp. 320-330.
  • Johnson, RH, Karau, KL, Molthen, RC and Dawson, CA, "Structural and Mechanical Consequences of Arterial Remodeling in a Rat Model of Pulmonary Hypertension Assessed using Micro-CT", Annals of Biomedical Engineering 28(supplement 1): S-38, 2000.
  • Johnson, RH, Hu, H, Molthen, RC, Hu, J, Wietholt, C and Dawson, CA, "Conebeam Micro-CT for Biomedical Imaging: Acquisition, Reconstruction, Image Processing and Analysis Algorithms", CD-ROM Proceedings of the World Congress on Medical Physics and Biomedical Engineering, Chicago, July 23-28, 2000.
  • Johnson, RH, Karau, KL, Molthen, RC, Haworth, ST and Dawson, CA, "Measuring Arterial Mechanical Properties from 3D Micro-CT Images", CD-ROM Proceedings of the World Congress on Medical Physics and Biomedical Engineering, Chicago, July 23-28, 2000.
  • Molthen, RC, Johnson, RH and Dawson, CA, "Using Graphics Hardware for CT Reconstruction", Annals of Biomedical Engineering 28(supplement 1): S-43, 2000.
  • Hu, J, Johnson, RH, Molthen, RC, Haworth, ST and Dawson, CA, "Helical Conebeam Micro-CT for Small Animal Imaging", Annals of Biomedical Engineering 28 (supplement 1): S-43, 2000.
  • Alves, JM, de Oliveira, LF, Lopes, RT, Johnson, RH, Ryaby, JT and Kaufman, JJ, "3D Microtomography for Trabecular Bone Assessment", Proceedings of the XVII Brazilian Biomedical Engineering Congress, Santa Catarina, Brazil, September 11-13, 2000, pp. 1141-5.


Book Chapters

  • Fan, Erkang; Baker, David; Fields, Stanley; Gelb, Michael H.; Buckner, Frederick S.; Van Voorhis, Wesley C.; Phizicky, Eric; Dumont, Mark; Mehlin, Christopher; Grayhack, Elizabeth; Sullivan, Mark; Verlinde, Christophe; DeTitta, George; Meldrum, Deirdre R.; Merritt, Ethan A.; Earnest, Thomas; Soltis, Michael; Zucker, Frank; Myler, Peter J.; Schoenfeld, Lori; Kim, David; Worthey, Liz; LaCount, Doug; Vignali, Marissa; Li, Jizhen; Mondal, Somnath; Massey, Archna; Carroll, Brian; Gulde, Stacey; Luft, Joseph; DeSoto, Larry; Holl, Mark; Caruthers, Jonathan; Bosch, Juergen; Robien, Mark; Arakaki, Tracy; Holmes, Margaret; Le Trong, Isolde; Hol, Wim G. J., "Structural genomics of pathogenic protozoa: an overview," Methods in Molecular Biology, Editors: B. Kobe, M. Guss, and T. Huber, Vol. 426, 497-513, 2008.


Recent Conference Papers

  • S. Singh, G. D. Tourassi, J. Y. Lo, "Effect of Similarity Metrics and ROI Sizes in Featureless Computer Aided Detection of Breast Masses in Tomosynthesis," International Workshop for Digital Mammography (IWDM), 2008
  • G. D. Tourassi, A. C. Sharma, S. Singh, R. S. Saunders, J. Y. Lo, E. Samei, B. P. Harrawood, "Knowledge Transfer Across Breast Cancer Screening Modalities: A Pilot Study Using an Information- Theoretic CADe System for Mass Detection," International Workshop for Digital Mammography (IWDM), 2008
  • S. Singh, G. D. Tourassi, A. S. Chawla, R. S. Saunders, E. Samei, J. Y. Lo, "Computer Aided Detection of Breast Masses in Tomosynthesis Reconstructed Volumes Using Information- Theoretic Principles," Medical Imaging: Computer Aided Diagnosis, 2008
  • R. Ike, S. Singh, G. D. Tourassi, "Effect of ROI Size on the Performance of an Information- Theoretic CAD System in Mammography: Multisize Analysis Fusion," Medical Imaging: CAD, 2008
  • A. S. Chawla, E. Samei, R. S. Saunders, J. Y. Lo, S. Singh, "Optimized Acquisition Scheme for Multi-projection Correlation Imaging of Breast," Medical Imaging: Computer Aided Diagnosis, 2008
  • S. Singh, G. D. Tourassi, J. Y. Lo, "Effect of Similarity Metrics and ROI Sizes in Featureless Computer Aided Detection of Breast Masses in Tomosynthesis," International Workshop for Digital Mammography (IWDM), 2008
  • G. D. Tourassi, A. C. Sharma, S. Singh, R. S. Saunders, J. Y. Lo, E. Samei, B. P. Harrawood, "Knowledge Transfer Across Breast Cancer Screening Modalities: A Pilot Study Using an Information- Theoretic CADe System for Mass Detection," International Workshop for Digital Mammography (IWDM), 2008
  • S. Singh, G. D. Tourassi, A. S. Chawla, R. S. Saunders, E. Samei, J. Y. Lo, "Computer Aided Detection of Breast Masses in Tomosynthesis Reconstructed Volumes Using Information- Theoretic Principles," Medical Imaging: Computer Aided Diagnosis, 2008 Page 5 of 7
  • R. Ike, S. Singh, G. D. Tourassi, "Effect of ROI Size on the Performance of an Information- Theoretic CAD System in Mammography: Multisize Analysis Fusion," Medical Imaging: CAD, 2008
  • A. S. Chawla, E. Samei, R. S. Saunders, J. Y. Lo, S. Singh, "Optimized Acquisition Scheme for Multi-projection Correlation Imaging of Breast," Medical Imaging: Computer Aided Diagnosis, 2008
  • J. Y. Lo, S. Singh, J. T. Dobbins, E. Samei, "New Developments in Digital Breast Tomosynthesis," American Associates of Physicists in Medicine (AAPM), 2007
  • S. Singh, G. D. Tourassi, J. Y. Lo, "Breast Mass Detection in Tomosynthesis Projection Images Using Information Theoretic Similarity Measures." Medical Imaging: Computer Aided Diagnosis, 2007
  • A. Jerebko, Y. Quan, N. Merlet, E. Ratner, S. Singh, J. Y. Lo, Arun Krishnan, "Feasibility study of breast tomosynthesis CAD system." Medical Imaging: Computer Aided Diagnosis, 2007
  • Yanqing Tian et. al. "Multifunctional Nanomaterials for Imaging, Sensing, and Therapy" American Chemical Society Meeting, May 12, 2008.
  • Vivek Nandakumar, Mark R. Holl, and Deirdre R. Meldrum, "A flexible framework for automation of single cell and cell-to-cell interaction analyses," Proceedings of the 4th IEEE Conference on Automation Science and Engineering, Washington DC, USA, August 23-26, 2008, pp. 424-430.
  • Yasser H. Anis, Mark R. Holl, and Deirdre R. Meldrum, "Automated vision-based selection and placement of single cells in microwell array formats," Proceedings of the 4th IEEE Conference on Automation Science and Engineering, Washington DC, USA, August 23-26, 2008, pp. 315-320.
  • Clement S. Sun, James R. Etzkorn, Mark R. Holl, Timothy W. Molter, Shawn K. McGuire, Sarah C. McQuaide, Lloyd W. Burgess, Mary E. Lidstrom, and Deirdre R. Meldrum, "Integration of user interface, device control, data acquisition and analysis for automated multispectral imaging of single biological cells," Proceedings of the 4th IEEE Conference on Automation Science and Engineering, Washington DC, USA, August 23-26, 2008, pp. 1013-1018.
  • Andrew W. Holle, Shih-Hui Chao, Mark R. Holl, Jeffrey M. Houkal, and Deirdre R. Meldrum, "Characterization of program controlled CO2 laser-cut PDMS channels for lab-on-a-chip applications," Proceedings of the 3rd Annual IEEE Conference on Automation Science and Engineering, Scottsdale, AZ, USA, Sept 22-25, 2007, pp. 621-627.
  • Patrick J. McVittie, Clement S. Sun, Tim W. Molter, Sarah C. McQuaide, Mary E. Lidstrom, Mark R. Holl, and Deirdre R. Meldrum, " Automated classification of macrophage membrane integrity using a fluorescent live/dead stain," Proceedings of the 3rd Annual IEEE Conference on Automation Science and Engineering, Scottsdale, AZ, USA, Sept 22-25, 2007, pp. 554-559.
  • Timothy W. Molter, Sarah C. McQuaide, Meng Zhang, Mark R. Holl, Lloyd W. Burgess, Mary E. Lidstrom, and Deirdre R. Meldrum, "Algorithm advancements for the measurement of single cell oxygen consumption rates," Proceedings of the 3rd Annual IEEE Conference on Automation Science and Engineering, Scottsdale, AZ, USA, Sept 22-25, 2007, pp. 386-391.
  • S. Singh, G. D. Tourassi, J. Y. Lo, "Breast Mass Detection in Tomosynthesis Projection Images Using Information Theoretic Similarity Measures." Medical Imagi